Closed ingkebil closed 4 years ago
Tried running bash /home/proj/stage/bin/git/demultiplexing/scripts/hiseqx/xcheckfornewrun.bash /home/proj/stage/flowcells/hiseqx/170630_ST-E00198_0227_AH2GL2CCXY/ /home/proj/stage/demultiplexed-runs/170630_ST-E00198_0227_AH2GL2CCXY/
, got following messages:
Also, could not rm demuxstarted.txt
as myself, had to switch to hiseq.clinical, is this intended?
the correct command is: bash /home/proj/stage/bin/git/demultiplexing/scripts/hiseqx/xcheckfornewrun.bash /home/proj/stage/flowcells/hiseqx/ /home/proj/stage/demultiplexed-runs/
;)
The returning flowcells from slow storage don't have the correct group permissions set on the run dir. I am making a note of that. so good call of removing it with a user that could.
Is this what you mean with 'all scripts'?
Aha, ok.
No.
The project log should contain no errors in regards to job submission. The project log can be found in in the demux directory, e.g. less /home/proj/stage/demultiplexed-runs/170630_ST-E00198_0227_AH2GL2CCXY/projectlog.20190709*.log
I looked at this one and starting the demux seems to have failed.
haha, alright. It looks this was the same as #93 ;)
This PR fixes the missing slurm Account from the invocation of the
xpostface.sh
How to test:
Expected outcome: The script should submit all scripts without error. Once ocnfirmed, you can scancel all jobs:
scancel -u <youruser>
This is a patch version bump: fixing a bug