Closed jemten closed 9 months ago
@jemten solved click issue by:
RUN mamba install -y -c conda-forge -c bioconda python=3.8 pip pytabix=0.1 && \
/opt/conda/bin/conda clean -ya && \
pip install --no-cache-dir genmod==3.8.0 && \
pip install --no-cache-dir click==8.1.3
I uplifted the setup.py dependencies and now running the same command you used for testing in CI suite @jemten .
Hello, The version 3.8 release of genmod on conda seems to be broken. It would be great to pin down the version numbers of everything. I install using
conda install genmod=3.8
and run:Also since the biocontainer image is based on the conda package it is broken there as well.
It is solvable by first installing genmod and then installing click version 8 so the problem seems to be with the click package specified in the requirements.txt