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Clinical-Genomics / genmod

Annotate models of genetic inheritance patterns in variant files (vcf files)
http://Clinical-Genomics.github.io/genmod/
MIT License
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Malformed INFO lines #131

Closed fellen31 closed 2 months ago

fellen31 commented 3 months ago

Hi, while running genmod annotate I'm getting: 

SyntaxError: One of the INFO lines is malformed:##INFO=<ID=gnomad_ac,Number=,Type=Integer,Description="added by echtvar from gnomad.v3.1.2.echtvar.v2.zip">

The info line with an empty Number= is added by another program, would be great if genmod could allow this line to exist.

fellen31 commented 2 months ago

Closing this issue as the line above is not really valid VCF, and the issue should be fixed within the other program/file.