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Clinical-Genomics / genmod

Annotate models of genetic inheritance patterns in variant files (vcf files)
http://moonso.github.io/genmod/
MIT License
74 stars 17 forks source link

'generate_pairs' is not defined #36

Closed wclee47 closed 9 years ago

wclee47 commented 9 years ago

Sorry for interrupting you again.

I ran the following command and encountered the error.

genmod annotate samples.vcf --family_file samples.ped -split -o samples_genmod.vcf

Process VariantConsumer-5: Traceback (most recent call last): File "/usr/local/lib/python2.7/multiprocessing/process.py", line 258, in _bootstrap self.run() File "build/bdist.linux-x86_64/egg/genmod/variant_consumer.py", line 399, in run proc_name File "build/bdist.linux-x86_64/egg/genmod/genetic_models.py", line 175, in check_genetic_models for pair in generate_pairs(compound_candidates): NameError: global name 'generate_pairs' is not defined

I searched for the error from the previous issues, but could not find it.

Please help me again :)

Won-Chul

moonso commented 9 years ago

Hello again,

sorry about that, something went wrong during the previous update. It is fixed now in 2.0.10

Måns

wclee47 commented 9 years ago

Now it works!

Thanks for your support!

Won-Chul