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Clinical-Genomics / genmod

Annotate models of genetic inheritance patterns in variant files (vcf files)
http://moonso.github.io/genmod/
MIT License
74 stars 17 forks source link

Missing compounds #37

Closed robinandeer closed 9 years ago

robinandeer commented 9 years ago

Hi, we're running genmod version 2.0.11

In the result output although "AR_comp" is annotated there aren't any compounds written to the VCF-file. I thought this was an issue in a previous version of genmod that was resolved, perhaps not?

I can send the vcf-files if you want to have a look

moonso commented 9 years ago

Please send the vcf and the ped file

robinandeer commented 9 years ago

I've linked the input files (I hope that it's the correct ones) under cust003/emma/15053/ on rasta - thanks!

moonso commented 9 years ago

Permission denied...

moonso commented 9 years ago

Can you or @emmser fix? Or maybe @ingkebil kan give me the sudo rights?

ingkebil commented 9 years ago

Thank you for requesting sudo rights. Unfortunately we have run out of rights for this month. You can reapply for more rights at the start for next month. Thank you for showing interest.

robinandeer commented 9 years ago

I don't know what @ingkebil means...

I've copied the files now and if you are part of group "cust003" you should have read and write access!

moonso commented 9 years ago

Got them now

ingkebil commented 9 years ago

You should be granted sudo rights tomorrow as well.

ingkebil commented 9 years ago

Nvm. @moonso you have sudo rights now.

moonso commented 9 years ago

You can update to 2.0.12

moonso commented 9 years ago

And it will work