search

Clinical-Genomics / genmod

Annotate models of genetic inheritance patterns in variant files (vcf files)
http://Clinical-Genomics.github.io/genmod/
MIT License
78 stars 19 forks source link

Problems with genmod score #38

Closed emmser closed 9 years ago

emmser commented 9 years ago

We are running WGS sample using vcf_parser 1.4.1

Error message:

Process VariantScorer-5:
Traceback (most recent call last):
  File "/home/hiseq.clinical/miniconda/envs/mip2/lib/python2.7/multiprocessing/process.py", line 258, in _bootstrap
    self.run()
  File "/home/hiseq.clinical/miniconda/envs/mip2/lib/python2.7/site-packages/genmod/variant_scorer.py", line 217, in run
    self.results.put(variant_batch)
  File "<string>", line 2, in put
  File "/home/hiseq.clinical/miniconda/envs/mip2/lib/python2.7/multiprocessing/managers.py", line 758, in _callmethod
    conn.send((self._id, methodname, args, kwds))
IOError: bad message length
slurmd[compute-0-1]: error: *** JOB 550598 CANCELLED AT 2015-07-03T22:14:21 DUE TO TIME LIMIT ***