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Clinical-Genomics / genmod

Annotate models of genetic inheritance patterns in variant files (vcf files)
http://Clinical-Genomics.github.io/genmod/
MIT License
78 stars 19 forks source link

VEP Friendly Output #65

Closed AndrewSkelton closed 8 years ago

AndrewSkelton commented 8 years ago

Hi,

Enhancement Request.

I use VEPs tab delimited output a lot to integrate my results, however I'd like to use Genmod's added inheritance patterns. Could the option to output a tab delimited style be added instead of VCF?

Thanks!

moonso commented 8 years ago

Hello,

could you provide an example of how it should look?

Måns

AndrewSkelton commented 8 years ago

Something like:

Variation   GeneticModel   ModelScore
1_1002_A/G   AR_hom_dn|AR_hom   48

I can get extract this by parsing the VCF, but it would just be a "nice to have", not essential.