Can not handle when chromosome prefix differs in vcf and resource

Clinical-Genomics / genmod

Annotate models of genetic inheritance patterns in variant files (vcf files)

http://moonso.github.io/genmod/

MIT License

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Closed moonso closed 7 years ago

moonso commented 8 years ago

Like chr1 in resource and 1 in vcf

henrikstranneheim commented 7 years ago

Yes, but this is more like:

chr1 in resource and chr1 in vcf, so chromosomes names ("1", "2" etc) seems to be hard-coded by genmod.

moonso commented 7 years ago

ping @henrikstranneheim