I have problem trying to build an annotation database, below is the error:
yhbl2@Tesla01:~/steve_wgs/genmod/examples$ genmod build small_geneset.gtf -t gtf -o test
/usr/lib/python2.7/dist-packages/pkg_resources.py:1031: UserWarning: /home/yhbl2/.python-eggs is writable by group/others and vulnerable to attack when used with get_resource_filename. Consider a more secure location (set with .set_extraction_path or the PYTHON_EGG_CACHE environment variable).
warnings.warn(msg, UserWarning)
Traceback (most recent call last):
File "/usr/local/bin/genmod", line 9, in
load_entry_point('genmod==3.5.12', 'console_scripts', 'genmod')()
File "/usr/local/lib/python2.7/dist-packages/click/core.py", line 722, in call
return self.main(args, kwargs)
File "/usr/local/lib/python2.7/dist-packages/click/core.py", line 697, in main
rv = self.invoke(ctx)
File "/usr/local/lib/python2.7/dist-packages/click/core.py", line 1066, in invoke
return _process_result(sub_ctx.command.invoke(sub_ctx))
File "/usr/local/lib/python2.7/dist-packages/click/core.py", line 895, in invoke
return ctx.invoke(self.callback, ctx.params)
File "/usr/local/lib/python2.7/dist-packages/click/core.py", line 535, in invoke
return callback(args, *kwargs)
File "/usr/local/lib/python2.7/dist-packages/click/decorators.py", line 17, in new_func
return f(get_current_context(), args, **kwargs)
File "build/bdist.linux-x86_64/egg/genmod/commands/build_annotation.py", line 81, in build
TypeError: 'module' object is not callable
Hiya,
I have problem trying to build an annotation database, below is the error:
yhbl2@Tesla01:~/steve_wgs/genmod/examples$ genmod build small_geneset.gtf -t gtf -o test /usr/lib/python2.7/dist-packages/pkg_resources.py:1031: UserWarning: /home/yhbl2/.python-eggs is writable by group/others and vulnerable to attack when used with get_resource_filename. Consider a more secure location (set with .set_extraction_path or the PYTHON_EGG_CACHE environment variable). warnings.warn(msg, UserWarning) Traceback (most recent call last): File "/usr/local/bin/genmod", line 9, in
load_entry_point('genmod==3.5.12', 'console_scripts', 'genmod')()
File "/usr/local/lib/python2.7/dist-packages/click/core.py", line 722, in call
return self.main(args, kwargs)
File "/usr/local/lib/python2.7/dist-packages/click/core.py", line 697, in main
rv = self.invoke(ctx)
File "/usr/local/lib/python2.7/dist-packages/click/core.py", line 1066, in invoke
return _process_result(sub_ctx.command.invoke(sub_ctx))
File "/usr/local/lib/python2.7/dist-packages/click/core.py", line 895, in invoke
return ctx.invoke(self.callback, ctx.params)
File "/usr/local/lib/python2.7/dist-packages/click/core.py", line 535, in invoke
return callback(args, *kwargs)
File "/usr/local/lib/python2.7/dist-packages/click/decorators.py", line 17, in new_func
return f(get_current_context(), args, **kwargs)
File "build/bdist.linux-x86_64/egg/genmod/commands/build_annotation.py", line 81, in build
TypeError: 'module' object is not callable
Please can you help?