Clinical-Genomics / genmod

Annotate models of genetic inheritance patterns in variant files (vcf files)
http://moonso.github.io/genmod/
MIT License
74 stars 17 forks source link

genmod build command does not work #74

Closed brianlamx closed 7 years ago

brianlamx commented 7 years ago

Hiya,

I have problem trying to build an annotation database, below is the error:

yhbl2@Tesla01:~/steve_wgs/genmod/examples$ genmod build small_geneset.gtf -t gtf -o test /usr/lib/python2.7/dist-packages/pkg_resources.py:1031: UserWarning: /home/yhbl2/.python-eggs is writable by group/others and vulnerable to attack when used with get_resource_filename. Consider a more secure location (set with .set_extraction_path or the PYTHON_EGG_CACHE environment variable). warnings.warn(msg, UserWarning) Traceback (most recent call last): File "/usr/local/bin/genmod", line 9, in load_entry_point('genmod==3.5.12', 'console_scripts', 'genmod')() File "/usr/local/lib/python2.7/dist-packages/click/core.py", line 722, in call return self.main(args, kwargs) File "/usr/local/lib/python2.7/dist-packages/click/core.py", line 697, in main rv = self.invoke(ctx) File "/usr/local/lib/python2.7/dist-packages/click/core.py", line 1066, in invoke return _process_result(sub_ctx.command.invoke(sub_ctx)) File "/usr/local/lib/python2.7/dist-packages/click/core.py", line 895, in invoke return ctx.invoke(self.callback, ctx.params) File "/usr/local/lib/python2.7/dist-packages/click/core.py", line 535, in invoke return callback(args, *kwargs) File "/usr/local/lib/python2.7/dist-packages/click/decorators.py", line 17, in new_func return f(get_current_context(), args, **kwargs) File "build/bdist.linux-x86_64/egg/genmod/commands/build_annotation.py", line 81, in build TypeError: 'module' object is not callable

Please can you help?