Allow genmod to rank STR expansion variants; e.g. an expansionHunter vcf:
fileformat=VCFv4.1
INFO=
INFO=
INFO=
INFO=
INFO=
INFO=
FORMAT=
FORMAT=
FORMAT=
FORMAT=
FORMAT=
FORMAT=
FORMAT=
ALT=
ALT=
X 146993568 . G , . PASS END=146993628;REF=20;RL=60;RU=CGG;REPID=FMR1 GT:SO:REPCN:REPCI:ADSP:ADFL:ADIR 1/2:SPANNING/INREPEAT:30/125:30-30/100-147:3/0:20/21:0/33
Would then need the knowledge that normal variants in FMR1 go up to "STR65".. Or just pass them through to visualisation anyway?
Allow genmod to rank STR expansion variants; e.g. an expansionHunter vcf:
fileformat=VCFv4.1
INFO=
INFO=
INFO=
INFO=
INFO=
INFO=
FORMAT=
FORMAT=
FORMAT=
FORMAT=
FORMAT=
FORMAT=
FORMAT=
ALT=
ALT=
X 146993568 . G, . PASS END=146993628;REF=20;RL=60;RU=CGG;REPID=FMR1 GT:SO:REPCN:REPCI:ADSP:ADFL:ADIR 1/2:SPANNING/INREPEAT:30/125:30-30/100-147:3/0:20/21:0/33
Would then need the knowledge that normal variants in FMR1 go up to "STR65".. Or just pass them through to visualisation anyway?