Closed bartcharbon closed 3 years ago
Hi @bartcharbon , thank you for considering genmod. While not specified, genmod is not adapted to work on multi allelic variants. I recommend that you split and normalise the vcf before running genmod.
If you consider this solved, please close
For compounds, in case of multi allelics VCF lines, comma's are added in the created key, which are the list sepearators in the VCF INFO field
example: Compounds=FAM001:1_1234567_G_A,T|1_1234568_C_T,FAM002:1_1234567_G_A
Which in VCF is a list of: