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Clinical-Genomics
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genmod
Annotate models of genetic inheritance patterns in variant files (vcf files)
http://moonso.github.io/genmod/
MIT License
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Annotate with CADD not working
#33
landyk01
closed
9 years ago
1
Update build_annotation.py
#32
glabilloy
closed
9 years ago
1
Question for X-Linked recessive case analysis
#31
hmkim
closed
9 years ago
4
Does this work for VCFs with more than one trio?
#30
leipzig
closed
9 years ago
6
genmod breaking VCF format when adding software tag to header
#29
tzhughes
closed
9 years ago
2
Sort order not respected by genmod
#28
tzhughes
closed
9 years ago
3
Analysing WG quad data- genmod
#27
tzhughes
closed
9 years ago
29
Version 1.5.19 crashing also with test data but with different error
#26
tzhughes
closed
9 years ago
2
Version 1.5.19 crashing
#25
tzhughes
closed
9 years ago
2
Implement genmod analyze
#24
moonso
closed
9 years ago
1
Add -strict flag
#23
moonso
closed
10 years ago
1
change to relative imports within package
#22
moonso
closed
10 years ago
0
AR_comp design
#21
tzhughes
closed
10 years ago
16
Denovo and noCalls
#20
tzhughes
closed
10 years ago
9
Stats from real data indicate that implementation of -phase is a loosening of conditions
#19
tzhughes
closed
10 years ago
32
Erroneous output vcf if input vcf contains variants on multiple chromosomes
#18
tzhughes
closed
10 years ago
4
Runing with -o creates an output file owned by root in pwd
#17
tzhughes
closed
10 years ago
2
Results of running the AR_comp examples with and without -phase
#16
tzhughes
closed
10 years ago
3
Testing of AR_comp model
#15
tzhughes
closed
10 years ago
0
Extracting family from VCF file and phasing
#14
tzhughes
closed
9 years ago
8
-phase option does not seem to be in effect
#13
tzhughes
closed
10 years ago
7
Testing FAM file deviations
#12
tzhughes
closed
10 years ago
6
IOError: [Errno 13] Permission denied: u'/Lib.....genes.db'
#11
tzhughes
closed
10 years ago
2
Testing a simple pull request
#10
tzhughes
closed
10 years ago
1
A bit confused by the new way of performing annotations for AR_comp
#9
tzhughes
closed
10 years ago
2
Behaviour when difference in samples present in VCF and FAM files
#8
tzhughes
closed
10 years ago
7
--phased option throwing error
#7
tzhughes
closed
10 years ago
3
Possible issue with definition of XR
#6
tzhughes
closed
10 years ago
10
Regarding tab separation
#5
tzhughes
closed
10 years ago
1
Parsing of VCF file - CHROM column not correctly parsed
#4
tzhughes
closed
10 years ago
7
local variable 'exons' referenced before assignment
#3
tzhughes
closed
10 years ago
12
Add a Bitdeli Badge to README
#2
bitdeli-chef
closed
10 years ago
0
A couple of questions about treatment of non-standard scenarios
#1
tzhughes
closed
10 years ago
1
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