compare two vcf files - Githubissues

Clinical-Genomics / genotype

Simple genotype comparison of VCF files

http://taboo.readthedocs.org/en/latest/

MIT License

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Closed silvius76 closed 6 years ago

silvius76 commented 8 years ago

Hi,

I read that taboo can compare vcf files,

I run:

taboo compare file*.sorted.vcf > diff.txt

But "compare" option dosen't exist I saw in man page...but nothing

I need check only different contacts between two vcf Is it poossible ?

Thanks

robinandeer commented 6 years ago

Genotype can compare genotype calls from two separate sources

But it's not possible of within the range of the software to do more generalized comparisons between VCF files.