Bugfix

[mayabrandi]

We compare the sets and not the ordered lists. Very important fix

How to test:

Go to hasta. Run:

• bash /home/proj/production/servers/resources/hasta.scilifelab.se/update-genotype-stage.sh bugfix

• usestage

• genotype -c /home/proj/stage/servers/config/hasta.scilifelab.se/genotype-stage.yaml export-sample-analysis -d 100

Expected test outcome:

• [x] Take a screenshot and attach or copy/paste the output.

Review:

• [x] code approved by @mayabrandi
• [x] tests executed by @mayabrandi
• [x] "Merge and deploy" approved by @patrikgrenfeldt Thanks for filling in who performed the code review and the test!

This is patch version bump because it's a fix

[mayabrandi]

Has been tested through cg on stage and the data was properly generated and loaded into the trending database.

The command witch was run on hasta was:

cg -c /home/proj/stage/servers/config/hasta.scilifelab.se/cg-stage.yaml upload vogue genotype -d 3000

The output lookes like this:

[adrosenbaum]

Nice done!

[mayabrandi]

Output from genotype export-sample-analysis -d 100 on hasta stage Highlighted an exaple rs number for a sample where the internal analysis (sequence key) reported TC and the MAF analysis(genotype key) reported CT. The comparison should be true, which it is. Before the bugfix it was false.

[patrikgrenfeldt]

deployed on hasta