fix broken master - Githubissues

Clinical-Genomics / genotype

Simple genotype comparison of VCF files

http://taboo.readthedocs.org/en/latest/

MIT License

8 stars 2 forks source link

fix broken master #73

Open henrikstranneheim opened 8 months ago

henrikstranneheim commented 8 months ago

This PR adds/fixes ...

Fixes

Broken dependencies by upgrading: -Numpy
Python
MarkupSafe

Changed

Python to use 3.9
Use Poetry as a package manager
Update Dockerfile
Update GitHub actions

How to prepare for test:

[ ] ssh to Hasta
[ ] install on stage of Hasta: bash /home/proj/production/servers/resources/hasta.scilifelab.se/update-tool-stage.sh -e S_genotype -t genotype -b poetry

How to test:

[ ] Login to ...
[ ] Click on ...

Expected test outcome:

[ ] Check that ...
[ ] Take a screenshot and attach or copy/paste the output.

Review:

[ ] Tests executed by
[ ] "Merge and deploy" approved by Thanks for filling in who performed the code review and the test!

This version is a:

[ ] MAJOR - when you make incompatible API changes
[ ] MINOR - when you add functionality in a backwards compatible manner
[ ] PATCH - when you make backwards compatible bug fixes or documentation/instructions

Implementation plan:

[ ] Deploy to ...
[ ] Inform to ...

sonarcloud[bot] commented 7 months ago

Quality Gate failed

Failed conditions
1 Security Hotspot

See analysis details on SonarCloud