(feat taxprofiler): Store multiqc intermediate json files

[sofstam]

Added

• MultiQC intermediate files to HK

How to prepare for test

• [ ] ssh to hasta.scilifelab.se
• [ ] Use stage: us
• [ ] Paxa the environment: paxa
• [ ] Install on stage (example for hasta): bash /home/proj/production/servers/resources/hasta.scilifelab.se/update-tool-stage.sh -e S_hermes -t hermes -b taxprofiler_intermediate_json_files

How to test

• [ ] housekeeper get bundle -v propersheep

Expected test outcome

• [ ] Check that ...
• [ ] Take a screenshot and attach or copy/paste the output.

Review

• [ ] Tests executed by
• [ ] "Merge and deploy" approved by Thanks for filling in who performed the code review and the test!

This version is a

• [ ] MAJOR - when you make incompatible API changes
• [ ] MINOR - when you add functionality in a backwards compatible manner
• [ ] PATCH - when you make backwards compatible bug fixes or documentation/instructions

Implementation Plan

• [ ] Document in ...
• [ ] Deploy this branch
• [ ] Inform to ...

[sofstam]

Thanks for the comments.

• Updated the excel document
• Saw this now that the tests are failing, updating the PR :)

[sofstam]

PR updated!

[codecov-commenter]

Codecov Report

All modified and coverable lines are covered by tests :white_check_mark:

Project coverage is 92.99%. Comparing base (534bd90) to head (804aa49). Report is 1 commits behind head on main.

Additional details and impacted files

```diff @@ Coverage Diff @@ ## main #107 +/- ## ======================================= Coverage 92.98% 92.99% ======================================= Files 26 26 Lines 912 913 +1 ======================================= + Hits 848 849 +1 Misses 64 64 ``` | [Flag](https://app.codecov.io/gh/Clinical-Genomics/hermes/pull/107/flags?src=pr&el=flags&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Clinical-Genomics) | Coverage Δ | | |---|---|---| | [unittests](https://app.codecov.io/gh/Clinical-Genomics/hermes/pull/107/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Clinical-Genomics) | `92.99% <100.00%> (+<0.01%)` | :arrow_up: | Flags with carried forward coverage won't be shown. [Click here](https://docs.codecov.io/docs/carryforward-flags?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Clinical-Genomics#carryforward-flags-in-the-pull-request-comment) to find out more.

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[sofstam]

Deploy on stage:

[sofstam]

Deploy on production: