add manifest

[rannick]

Description

Add tags for manifest files in for nextflow pipelines Update docs with export for nextflow pipelines

How to prepare for test

• [ ] ssh to hasta.scilifelab.se
• [ ] Use stage: us
• [ ] Paxa the environment: paxa
• [ ] Install on stage (example for hasta): bash /home/proj/production/servers/resources/hasta.scilifelab.se/update-tool-stage.sh -e S_hermes -t hermes -b [THIS-BRANCH-NAME]

How to test

• [ ] Do ...

Expected test outcome

• [ ] Check that ...
• [ ] Take a screenshot and attach or copy/paste the output.

Review

• [ ] Tests executed by
• [ ] "Merge and deploy" approved by Thanks for filling in who performed the code review and the test!

This version is a

• [ ] MAJOR - when you make incompatible API changes
• [ ] MINOR - when you add functionality in a backwards compatible manner
• [ ] PATCH - when you make backwards compatible bug fixes or documentation/instructions

Implementation Plan

• [ ] Document in ...
• [ ] Deploy this branch
• [ ] Inform to ...

[codecov-commenter]

Codecov Report

All modified and coverable lines are covered by tests :white_check_mark:

Project coverage is 92.62%. Comparing base (20ed3f2) to head (5265e08). Report is 5 commits behind head on main.

Additional details and impacted files

```diff @@ Coverage Diff @@ ## main #122 +/- ## ======================================= Coverage 92.61% 92.62% ======================================= Files 27 27 Lines 962 963 +1 ======================================= + Hits 891 892 +1 Misses 71 71 ``` | [Flag](https://app.codecov.io/gh/Clinical-Genomics/hermes/pull/122/flags?src=pr&el=flags&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Clinical-Genomics) | Coverage Δ | | |---|---|---| | [unittests](https://app.codecov.io/gh/Clinical-Genomics/hermes/pull/122/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Clinical-Genomics) | `92.62% <100.00%> (+<0.01%)` | :arrow_up: | Flags with carried forward coverage won't be shown. [Click here](https://docs.codecov.io/docs/carryforward-flags?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Clinical-Genomics#carryforward-flags-in-the-pull-request-comment) to find out more.

:umbrella: View full report in Codecov by Sentry.
:loudspeaker: Have feedback on the report? Share it here.

[rannick]

repository is clean
Logging deploy ...
Getting deployer... done.
Getting last commit message and SHA... done.
Getting version of deploy scripts... /home/hiseq.clinical
done.
Log deploy... done.
hermes version: 4.4.12