Clinical-Genomics / hermes

Communication layer between CG and the pipelines.
https://clinical-genomics.github.io/hermes/
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Add deepvariant report into housekeeper #80

Open karlnyr opened 1 year ago

karlnyr commented 1 year ago

Deepvariant creates a summary report which I would like us to save permanently in Housekeeper.

The report contains the relative counts of variants inside a sample. This could, later on, be used for checking the distribution of het- homozygous variants and possible deviations in the base calling of cases.

The file should be tagged with:

Vince-janv commented 3 weeks ago

@karlnyr @jemten Did this ever happen?

jemten commented 3 weeks ago

Not yet, but I'm aware of the issue and we will add it to the next release