housekeeper get file -t <tag> <bundle> returns only the first file it finds
Suggested solution
Fix the query in the housekeeper.store.api.find.files() method
This can be closed when
A list of files associated to the provided tag and bundle is returned
To reproduce (stage)
housekeeper get bundle uniquewolf -v
housekeeper get file -t vcf-snv-clinical uniquewolf (the filtered .coding.vcf.gz is not returned as one would expect)
However, the .coding.vcf.gz file has been added manually with housekeeper add file -t <tags> -b <bundle>. For the rest of the tags it seems that the command works as expected:
Description
housekeeper get file -t <tag> <bundle>
returns only the first file it findsSuggested solution
Fix the query in the
housekeeper.store.api.find.files()
methodThis can be closed when
A list of files associated to the provided tag and bundle is returned
To reproduce (stage)
housekeeper get bundle uniquewolf -v
housekeeper get file -t vcf-snv-clinical uniquewolf
(the filtered.coding.vcf.gz
is not returned as one would expect)However, the
.coding.vcf.gz
file has been added manually withhousekeeper add file -t <tags> -b <bundle>
. For the rest of the tags it seems that the command works as expected: