Clinical-Genomics / microSALT

Microbial Sequence Analysis and Loci-based Typing pipeline for use on NGS WGS data.

GNU General Public License v3.0

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Deliverables file fix #111

Closed sylvinite closed 4 years ago

sylvinite commented 4 years ago

Description

The features of this PR primarily concerns internals

Resolves issue #108

Primary function of PR

[X] Hotfix
[ ] Patch
[ ] Minor functionality improvement
[ ] New type of analysis
[ ] Backward-breaking functionality improvement
[ ] This change requires internal documents to be updated
[ ] This change requires another repository to be updated

Testing

If the update is a hotfix, it is sufficient to rely on the development testing along with the Travis self-test automatically applied to the PR.

Additionally:

up
microSALT utils report /home/proj/production/microbial/queries/ACC7105.json --type json_dump --output ~ --email 2@2.com
Check that file is corrected in accordance with #108

Test results

File is corrected in accordance with #108

Sign-offs

[X] Code tested by @sylvinite
[ ] Approved to run at Clinical-Genomics by @sylvinite