Clinical-Genomics / microSALT

Microbial Sequence Analysis and Loci-based Typing pipeline for use on NGS WGS data.

GNU General Public License v3.0

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Attempt to make resistance searches more compatible #121

Closed sylvinite closed 3 years ago

sylvinite commented 3 years ago

Description

The features of this PR primarily concerns internals

Summary of the changes made:

Improved backwards compatibility for QUAST files and old resFinder resistance reference files.

This improvement was made in order to re-run ALL old analysis.

Primary function of PR

[ ] Hotfix
[x] Patch
[ ] Minor functionality improvement
[ ] New type of analysis
[ ] Backward-breaking functionality improvement
[ ] This change requires internal documents to be updated
[ ] This change requires another repository to be updated

Testing

Tests are self-evident as the fix was used to successfully re-run all old data.

Sign-offs

[x] Code tested by @sylvinite
[x] Approved to run at Clinical-Genomics by @sylvinite