Clinical-Genomics / microSALT

Microbial Sequence Analysis and Loci-based Typing pipeline for use on NGS WGS data.
GNU General Public License v3.0
2 stars 3 forks source link

Automatic reference downloader doesnt kick in #122

Closed sylvinite closed 3 years ago

sylvinite commented 3 years ago

Describe the bug Automatic reference downloader doesnt kick in.

To Reproduce Remove an existing reference or add a new one. It wont be downloaded by microSALT.

Expected behavior Its expected to be downloaded.

Additional context It could possibly be due to changes in NCBIs API. Or a timeout issue. Or the reference name is parsed incorrectly Identified through sample ACC7248A23

talnor commented 3 years ago

This is fixed as of #123.