Emails with reports from slurm not received

Clinical-Genomics / microSALT

Microbial Sequence Analysis and Loci-based Typing pipeline for use on NGS WGS data.

GNU General Public License v3.0

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Emails with reports from slurm not received #124

Closed talnor closed 3 years ago

talnor commented 3 years ago

Describe the bug It seems like emails that are sent from slurm are not recieved. I.e. no emails are sent when an analysis run finishes. Reports are however sent when running microsalt utils report manually. Makes it difficult to keep track of when microbial analyses are done.

To Reproduce Steps to reproduce the behavior: Run the following as bash and sbatch:

source activate P_microSALT
microSALT utils report /home/proj/production/microbial/queries/934197.json --email <>@scilifelab.se

sylvinite commented 3 years ago

One possibility is that the HPC is so full that it can't generate the e-mails. Another one is that Google filters them as spam.

talnor commented 3 years ago

With "anyone on the web can post" emails are received. The sender email address is not listed as a member in the group. I am not able to currently add it, but maybe owner Isak can attempt it.

vwirta commented 3 years ago

which e-mail group are the emails sent to?

sylvinite commented 3 years ago

The mails are sent through ClinicalDelivery. Temporarily elevated @talnor to owner level. With great power, etc etc.

vwirta commented 3 years ago

@talnor when I check the group settings, it says that 'Entire organisation' can post. 'Anyone on the web' cannot post. Microsalt and root are considered external.

talnor commented 3 years ago

I agree. I temporarily set it to "anyone on the web" for debugging. Still can't add the external members properly. Might be due to scilifelab settings for our google groups.

sylvinite commented 3 years ago

Now it's working again.