The features of this PR primarily concerns internals
Summary of the changes made:
A yaml file containing submitted slurm jobs is saved in reports/trailblazer and analysis output directories. This file will enable progress tracking of Microsalt analyses with Trailblazer
If not self-evident, mention what prompted the change.
The need to make production life easier by displaying ongoing analyses and their status in Trailblazer
Primary function of PR
[x] Minor functionality improvement
Test results
PR is fully backwards compatible with no changes done to workflow logic
starting with CG works as it always did:
[10|11|345] 2z [maryia.ropart@hasta:/home/proj/stage/microbial/results/reports/trailblazer] [S_main] $ cg workflow microsalt start bigdrum
Saved config /home/proj/stage/microbial/queries/bigdrum.json
Running command source activate S_microSALT; /home/proj/bin/conda/envs/S_microSALT/bin/microSALT analyse /home/proj/stage/microbial/queries/bigdrum.json --input /home/proj/stage/microbial/fastq/bigdrum
Action running set for case bigdrum
Found deliverables file /home/proj/stage/microbial/results/reports/deliverables/770054_deliverables.yaml
Sign-offs
[x] Code tested by @Mropat
[x] Approved to run at Clinical-Genomics by @sylvinite
Description
The features of this PR primarily concerns internals
Summary of the changes made:
If not self-evident, mention what prompted the change.
Primary function of PR
Test results
PR is fully backwards compatible with no changes done to workflow logic
starting with CG works as it always did:
Sign-offs