Clinical-Genomics / microSALT

Microbial Sequence Analysis and Loci-based Typing pipeline for use on NGS WGS data.
GNU General Public License v3.0
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Issues with downloading from PubMLST #129

Closed talnor closed 3 years ago

talnor commented 3 years ago

Describe the bug PubMLST references are not updated for some species. The following error is displayed when starting an analysis: HTTP Error 404: Not Found

To Reproduce Run microSALT for a sample.

Expected behavior The ST_profile and ST_loci should be updated with the most recent data from PubMLST for the species and there should be no HTTP errors when running microSALT.

talnor commented 3 years ago

Should be fixed. Closing.