Some organisms on pubMLST did not have the MLST scheme as the first scheme. MicroSALT downloads therefore exited with HTTP errors and was unable to update the data for some organisms.
The features of this PR primarily concerns end-users/bioinformaticians/internals
Summary of the changes made:
Adapted query paths for MLST downloads, considering the variability.
Primary function of PR
[x] Hotfix
[ ] Patch
[ ] Minor functionality improvement
[ ] New type of analysis
[ ] Backward-breaking functionality improvement
[ ] This change requires internal documents to be updated
[ ] This change requires another repository to be updated
Testing
If the update is a hotfix, it is sufficient to rely on the development testing along with the Travis self-test automatically applied to the PR.
Sign-offs
[x] Code tested by Travis
[x] Approved to run at Clinical-Genomics by @sylvinite
talnor
commented
3 years ago
Description
Some organisms on pubMLST did not have the MLST scheme as the first scheme. MicroSALT downloads therefore exited with HTTP errors and was unable to update the data for some organisms.
The features of this PR primarily concerns end-users/bioinformaticians/internals
Summary of the changes made:
Primary function of PR
Testing
If the update is a hotfix, it is sufficient to rely on the development testing along with the Travis self-test automatically applied to the PR.
Sign-offs