Closed talnor closed 2 years ago
Reference update successful on 2021-08-19:
INFO - Checking versions of references..
WARNING - Unable to find requested organism 'SARS-CoV-2' in pubMLST database
INFO - pubMLST reference for Enterococcus faecium updated to 2021-08-18 from 2021-08-16
INFO - Re-indexed contents of /home/proj/production/microbial/references/ST_loci/enterococcus_faecium
INFO - Cached resFinder database identical to remote.
INFO - Version check done. Creating sbatch jobs
Seems to be working well.
Describe the bug A clear and concise description of what the bug is.
Running microSALT manually, the following error message appears during the reference updates:
BLAST Database creation error: Multi-letters chain PDB id is not supported in v4 BLAST DB
To Reproduce Steps to reproduce the behavior:
Expected behavior Update should finish without the error message.
Screenshots
Software version (please complete the following information):
Additional context Error appear to be species specific. Might be affecting Glaesserella parasuis analayses.