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Clinical-Genomics / microSALT

Microbial Sequence Analysis and Loci-based Typing pipeline for use on NGS WGS data.
GNU General Public License v3.0
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microSALT report - text for MLST thresholds above table is not correct #140

Open emmser opened 3 years ago

emmser commented 3 years ago

Is your feature request related to a problem? Please describe. The text above the table for MLST in the typing report doesn't correspond to the criteria in the method document for microSALT. This has led to misunderstandings between prodbioinfo team and the customers when delivering samples.

In the report it says: Identitetströskel 100%, Längdtröskel 90%, Novel misstankströskel 99.5%

In the document: At least one allele number for each locus is determined with 99.5% identity, and 100% span

Describe the solution you'd like I want the correct criteria written in the report and they should be the same as in the method document.

Describe alternatives you've considered A clear and concise description of any alternative solutions or features you've considered.

Additional context Add any other context or screenshots about the feature request here.

pbiology commented 1 year ago

Check with production if this is still to be fixed