Clinical-Genomics / microSALT

Microbial Sequence Analysis and Loci-based Typing pipeline for use on NGS WGS data.
GNU General Public License v3.0
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Changing Allel information in typing report for Novel allels #146

Closed Vince-janv closed 1 year ago

Vince-janv commented 2 years ago

This request was made by cust056 in ticket 533193.

Is your feature request related to a problem? Please describe. Customer thinks assigning the closest allel to a Loci if the identity is not 100%, is misleading.

Describe the solution you'd like Customer suggests any of the following information in the field instead:

Update 2022-01-19: cust056 has also requested to have the sekvenstyp in the summary table set to okänd for the samples that fail the thresholds.

Additional context Screenshot of the field in question is shown below: Screenshot 2021-09-20 at 13 11 26 (1)

Screenshot of the field in the summary table: resultatsammanstallning_ex

pbiology commented 1 year ago

Will be continued in JASEN Clinical-Genomics/CG-JASEN#4