specify openjdk version

[henningonsbring]

This PR specifies a version of openjdk in the install script which would enable trimmomatic to run without the random fails mentioned in this issue: https://github.com/Clinical-Genomics/microSALT/issues/152

Testing

If the update is a hotfix, it is sufficient to rely on the development testing along with the Travis self-test automatically applied to the PR.

Deploy correct branch on stage:

• bash /home/proj/production/servers/resources/hasta.scilifelab.se/update-microsalt-stage.sh openjdk

If starting microSALT with cg:

• us
• paxa -u <user> -s hasta -r cg-stage
• bash /home/proj/production/servers/resources/hasta.scilifelab.se/update-cg-stage.sh master

Test routine to verify the stability of the PR:

• Run microSALT with one of the following commands:
  • microSALT analyse /home/proj/stage/microbial/queries/merrymink.json --input /home/proj/stage/microbial/fastq/merrymink/
  • cg workflow microsalt start merrymink

_Verify that the results for projects MIC3109, MIC4107, MIC4109 & ACC5551 are consistent with the results attached to AMSystem doc 1490, MicrobialWGS.xlsx

[henningonsbring]

Ran cg workflow microsalt start -t 717876 and it completed without a single trimmomatic crash. This specific ticket crashed before with the old openjdk version. Also I ran 31 trimmomatic runs in parallel all using 8 threads on the login node, first without changing openjdk then java crashed, after updating openjdk then all trimmomatic runs completed without any error.