Duplication rate missing in json output

Clinical-Genomics / microSALT

Microbial Sequence Analysis and Loci-based Typing pipeline for use on NGS WGS data.

GNU General Public License v3.0

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Duplication rate missing in json output #168

Open seallard opened 7 months ago

seallard commented 7 months ago

Describe the bug The duplication_rate field is empty in the output json file when it should not be empty. The values are reported in the html output report.