Closed samuell closed 1 month ago
I haven't successfully tested the installation on Hasta Stage yet, since it seems to break on some unrelated things (can not find databases etc).
I might need to discuss with some of you on how to best test this on Hasta.
Description
This PR moves the CI workflow configuration from the previous Travis CI one to GitHub actions, as suggested in #174
Some more details of changes done:
${CONDA_PREFIX}/testproject
was changed to${CONDA_PREFIX}/testdata
instead, since the former does not exist in the repo.You can check the output of the converted code on the actions tab of this repo.
Primary function of PR
Testing
If the update is a hotfix, it is sufficient to rely on the development testing along with the Travis self-test automatically applied to the PR.
Test routine to verify the stability of the PR:
bash /home/proj/production/servers/resources/hasta.scilifelab.se/install-microsalt-stage.sh BRANCHNAME
us
conda activate S_microSALT
_export MICROSALT_CONFIG=/home/proj/dropbox/microSALT.json
_microSALT analyse project MIC3109
microSALT analyse project MIC4107
microSALT analyse project MIC4109
microSALT analyse project ACC5551
_Verify that the results for projects MIC3109, MIC4107, MIC4109 & ACC5551 are consistent with the results attached to AMSystem doc 1490, MicrobialWGS.xlsx
Test results
These are the results of the tests, and necessary conclusions, that prove the stability of the PR.
Sign-offs