Last second fixes

[sylvinite]

This PR adds the following features:

• JSON is generated in runfolder when doing a normal analysis
• JSON now contains more QC data
• E-mailing from the nodes might work now
• Novel alleles and Novel+Thresholds failed are now classed as Unknown
• Genologics config is now read from the microSALT config

How to test: On hasta:

0. If you have any files named genologics in your home directory. Temporarily rename them.
1. Pull branch into /home/proj/stage/bin/git/microSALT
2. us
3. source activate S_microSALT
4. export MICROSALT_CONFIG=/home/proj/dropbox/microSALT.json 4.1 doublecheck that the paths in /home/proj/dropbox/microSALT.json works for you
5. pip install .
6. microSALT analyse sample ACC5710A5 --email (email)
7. microSALT analyse project ACC5710 --email (email)

Expected outcome:

For steps 6 and 7 the following is expected to happen:

• An e-mail will be sent with a typing and qc report upon slurm completion. It is ok if it doesn't. If it doesnt, generate the e-mail with the microSALT utils report command.
• Sample A5, report sequence type as 'Unknown' in the typing report
• In the results folder for sample/project, there should be a json file. The contents of at least the QC report should be within it.

In other words, screenshots of the e-mailed typing report and the contents of the json file should be sufficient.

Review:

• [x] reviewed by self @sylvinite
• [x] tests executed by @talnor
• [x] deployed approved @ingkebil

This is minor version bump because the code can't alter the results in a mysterious way; is backwards compatible, and will either outright crash or not generate the requested change; if it is incorrect.

[talnor]

Outcome of test:

• Email sent for both runs with typing and QC report.
• Sequence type 'unkown' for both runs
• json files created in both project folders

The json files and typing reports:

[ingkebil]

Merge ahead!