Clinical-Genomics / microSALT

Microbial Sequence Analysis and Loci-based Typing pipeline for use on NGS WGS data.
GNU General Public License v3.0
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fix: select default branch #84

Closed ingkebil closed 4 years ago

ingkebil commented 4 years ago

Description

This PR fixes

[0|0|650] θ63° [kenny.billiau@hasta:~/git/servers] [base] microsalt 14s ± bash resources/hasta.scilifelab.se/update-microsalt-stage.sh master
on the host hasta.scilifelab.se, continue
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100  2688  100  2688    0     0   8479      0 --:--:-- --:--:-- --:--:--  8452
/dev/fd/63: line 7: ${$1+x}: bad substitution

Primary function of PR

Testing

Expected outcome: microSALT installs without errors.

Test results

These are the results of the tests, and necessary conclusions, that prove the stability of the PR.

Sign-offs

sylvinite commented 4 years ago

Nifty! Shouldn't be failing. I just did a stupid with the TRAVIS_BRANCH variable.

sylvinite commented 4 years ago

Due to the urgency of getting travis builds running again, and the size of the fix, and the nuisance of updating the .travis file; this got directly pulled into master.