Replace microSALT LIMS dependency

Clinical-Genomics / microSALT

Microbial Sequence Analysis and Loci-based Typing pipeline for use on NGS WGS data.

GNU General Public License v3.0

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Replace microSALT LIMS dependency #97

Closed sylvinite closed 4 years ago

sylvinite commented 4 years ago

Currently microSALT is dependent on a Genologics LIMS instance. Remove this LIMS dependency, and replace it with sample info being read in through a JSON file through the CLI.