Clinical-Genomics / microSALT

Microbial Sequence Analysis and Loci-based Typing pipeline for use on NGS WGS data.

GNU General Public License v3.0

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resistance regex supports references version #99

Closed b4ckm4n closed 4 years ago

b4ckm4n commented 4 years ago

Description

The features of this PR primarily concerns internals.

When scraping resistance: version of gene bank ID was not picked up, crashing microSALT. Hotfix fixes this.

Primary function of PR

[x] Hotfix
[ ] Patch
[ ] Minor functionality improvement
[ ] New type of analysis
[ ] Backward-breaking functionality improvement
[ ] This change requires internal documents to be updated
[ ] This change requires another repository to be updated

Testing

Test run problematic sample, ACC6417A121. Expected outcome: report with typical results generated.

This being a hotfix, all other tests are considered covered by Travis self tests.

Test results

[x] report with typical results generated

Sign-offs

[x] Code tested by @b4ckm4n
[x] Approved to run at Clinical-Genomics by @sylvinite