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Clinical-Genomics
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microSALT
Microbial Sequence Analysis and Loci-based Typing pipeline for use on NGS WGS data.
GNU General Public License v3.0
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3
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cgmlst implementation fully functional
#32
sylvinite
closed
6 years ago
0
Minor report fix
#31
sylvinite
closed
6 years ago
0
Cleaned reports, added campylo fix, cleaned db columns
#30
sylvinite
closed
6 years ago
0
Loads of bioinformatical commands
#29
sylvinite
closed
6 years ago
0
Added resistance genes, span support. post validation
#28
sylvinite
closed
6 years ago
0
New order
#27
sylvinite
closed
6 years ago
0
Refixing the prior fix
#26
sylvinite
closed
6 years ago
0
More validation fixes.
#25
sylvinite
closed
6 years ago
0
Refactored ref_updater, added dynamic organism inclusion
#24
sylvinite
closed
6 years ago
0
Improved report generation
#23
sylvinite
closed
6 years ago
0
Version v2.0.0
#22
sylvinite
closed
6 years ago
0
E-mail and other things
#21
sylvinite
closed
6 years ago
0
Syncing bugfix
#20
sylvinite
closed
6 years ago
0
Datefix
#19
sylvinite
closed
6 years ago
0
Changed VRE fix order to make it safer
#18
sylvinite
closed
6 years ago
0
Now consistently displays best stats when duplicate alleles for a loci
#17
sylvinite
closed
6 years ago
0
Remade renamer function
#16
sylvinite
closed
6 years ago
0
Clarified paths.yml
#15
sylvinite
closed
6 years ago
0
Cleaned up code
#14
sylvinite
closed
6 years ago
0
Improved click help and readme
#13
sylvinite
closed
6 years ago
0
Artwork
#12
sylvinite
closed
6 years ago
0
Rename script and some other nice stuff
#11
sylvinite
closed
6 years ago
0
ST filtering now working
#10
sylvinite
closed
6 years ago
0
Should be the final bugs fixed
#9
sylvinite
closed
6 years ago
0
Fixed unresolved project level bugs
#8
sylvinite
closed
6 years ago
1
Project level running. Some cleaning
#7
sylvinite
closed
6 years ago
0
Project level start
#6
sylvinite
closed
6 years ago
0
Adding some stuff to reports
#5
mayabrandi
closed
6 years ago
0
Config tweaks
#4
sylvinite
closed
6 years ago
0
Changing the view structure and some more
#3
mayabrandi
closed
6 years ago
0
Flask
#2
sylvinite
closed
6 years ago
0
App-skrot
#1
mayabrandi
closed
6 years ago
0
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