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Clinical-Genomics / mutacc

Mutation accumulation in a genomic background of reference samples
MIT License
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Discuss how to deal with structural variants #18

Closed adrosenbaum closed 5 years ago

adrosenbaum commented 6 years ago

A discussion for how the program should handle more complex structural variants. That is, how can one estimate the genomic region to where the reads supporting a variant are aligned in a bam file.

moonso commented 6 years ago

Hi @adrosenbaum , I think we should look at the breakpoints for the structural variations and depending on the type and size we can decide how big the regions to collect should be.