Submission criteria moved up, at the same level of clinvarSubmissionReleaseStatus etc
Schema:
"assertionCriteria": {
"type": "object",
"description": "\"Assertion criteria\" refers to documentation of the criteria that your organization uses to classify variants. It can be provided as a database identifier, like a PubMed ID, or a file that is submitted to ClinVar, but not both. Only one document may be provided for assertion criteria. These fields are equivalent to the \"Assertion method citation\" column in the spreadsheet. Note that only one single assertion criteria (a citation or an electronic document) may be provided for a submission. This assertion criteria will be applied to all interpretations in the submission. For assertion criteria submitted as a database identifier, an assertion criteria name will be calculated based on the citation details. For assertion criteria submitted as a file, you may provide an assertion criteria name during file upload on your Organization page in Submission Portal.",
"properties": {
"db": {
"type": "string",
"enum": [
"PubMed",
"DOI",
"pmc"
]
},
"id": {
"type": "string",
"pattern": "^[^;]+$",
"errors": {
"pattern": "The identifier value is considered an invalid citation. Please provide only one identifier as the citation for your assertion criteria."
}
},
"url": {
"type": "string",
"description": " The URL for a file that you have already submitted to ClinVar as assertion criteria. If you need to find this URL or if you need to submit new assertion criteria, please go to the \"View/add assertion criteria files\" tab on your Organization page in Submission Portal.",
"pattern": "^https://[qd]?submit.ncbi.nlm.nih.gov/(api/2.0/files|ft/byid)/.*",
"errors": {
"pattern": "The URL for assertion criteria must be the URL provided by ClinVar. If you need to find this URL or if you need to submit new assertion criteria, Please go to the \"View/add assertion criteria files\" tab on your Organization page in Submission Portal."
}
}
},
Additionally, bookshelf is no longer accepted as submission criteria db
Differences (previous API on the right):
Schema:
Additionally, bookshelf is no longer accepted as submission criteria db