ClinVar validation doesn't pass for uppercase/lowercase problem

[northwestwitch]

Example:

{'message': 'Created json file contains validation errors: ["\'Likely Pathogenic\' is not one of [\'Pathogenic\', \'Likely pathogenic\', \'Uncertain significance\', \'Likely benign\', \'Benign\', \'Pathogenic, low penetrance\', \'Uncertain risk allele\', \'Likely pathogenic, low penetrance\', \'Established risk allele\', \'Likely risk allele\', \'affects\', \'association\', \'drug response\', \'confers sensitivity\', \'protective\', \'other\', \'not provided\']", "\'Likely Pathogenic\' is not one of [\'Pathogenic\', \'Likely pathogenic\', \'Uncertain significance\', \'Likely benign\', \'Benign\', \'Pathogenic, low penetrance\', \'Uncertain risk allele\', \'Likely pathogenic, low penetrance\', \'Established risk allele\', \'Likely risk allele\', \'affects\', \'association\', \'drug response\', \'confers sensitivity\', \'protective\', \'other\', \'not provided\']", \'[] is too short\']'}

I think I'll move this issue to PreClinVar and I'll make it ignore case

[northwestwitch]

This is fixed now:

The only problem left is missing phenotype in one or more variants (empty list, hence: []) - but this is not a bug