Newish problematic assembly quality tracks from UCSC

Clinical-Genomics / raredisease

CG's rare disease pipeline in next flow, see the main repo here 👇

https://github.com/nf-core/raredisease

MIT License

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Newish problematic assembly quality tracks from UCSC #5

Closed dnil closed 2 years ago

dnil commented 4 years ago

Is your feature request related to a problem? Please describe.

UCSC now provide a new set of problematic regions in hg19. This complements previous mappability and segmental duplication regions. It would be nifty if we could annotate accordingly and display further warnings on problematic regions.

http://www.genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=problematic

henrikstranneheim commented 2 years ago

Could be added to https://github.com/nf-core/raredisease when the time comes