Clinical-Genomics / scout

VCF visualization interface
https://clinical-genomics.github.io/scout
BSD 3-Clause "New" or "Revised" License
147 stars 43 forks source link

Changelog reminder version #4664

Closed dnil closed 2 weeks ago

dnil commented 3 weeks ago

This PR adds a functionality or fixes a bug.

Testing on cg-vm1 server (Clinical Genomics Stockholm) **Prepare for testing** 1. Make sure the PR is pushed and available on [Docker Hub](https://hub.docker.com/repository/docker/clinicalgenomics/scout-server-stage) 1. Fist book your testing time using the Pax software available at [https://pax.scilifelab.se/](https://pax.scilifelab.se). The resource you are going to call dibs on is `scout-stage` and the server is `cg-vm1`. 1. `ssh @cg-vm1.scilifelab.se` 1. `sudo -iu hiseq.clinical` 1. `ssh localhost` 1. (optional) Find out which scout branch is currently deployed on cg-vm1: `podman ps` 1. Stop the service with current deployed branch: `systemctl --user stop scout.target` 1. Start the scout service with the branch to test: `systemctl --user start scout@` 1. Make sure the branch is deployed: `systemctl --user status scout.target` 1. After testing is done, repeat procedure at [https://pax.scilifelab.se/](https://pax.scilifelab.se), which will release the allocated resource (`scout-stage`) to be used for testing by other users.
Testing on hasta server (Clinical Genomics Stockholm) **Prepare for testing** 1. `ssh @hasta.scilifelab.se` 1. Book your testing time using the Pax software. `us; paxa -u -s hasta -r scout-stage`. You can also use the WSGI Pax app available at [https://pax.scilifelab.se/](https://pax.scilifelab.se). 1. (optional) Find out which scout branch is currently deployed on cg-vm1: `conda activate S_scout; pip freeze | grep scout-browser` 1. Deploy the branch to test: `bash /home/proj/production/servers/resources/hasta.scilifelab.se/update-tool-stage.sh -e S_scout -t scout -b ` 1. Make sure the branch is deployed: `us; scout --version` 1. After testing is done, repeat the `paxa` procedure, which will release the allocated resource (`scout-stage`) to be used for testing by other users.

How to test:

  1. how to test it, possibly with real cases/data

Expected outcome: The functionality should be working Take a screenshot and attach or copy/paste the output.

Review:

codecov[bot] commented 3 weeks ago

Codecov Report

All modified and coverable lines are covered by tests :white_check_mark:

Project coverage is 84.49%. Comparing base (86497f3) to head (0af69a4).

Additional details and impacted files ```diff @@ Coverage Diff @@ ## main #4664 +/- ## ======================================= Coverage 84.49% 84.49% ======================================= Files 310 310 Lines 18798 18798 ======================================= Hits 15884 15884 Misses 2914 2914 ```

:umbrella: View full report in Codecov by Sentry.
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northwestwitch commented 3 weeks ago

Could this action be used? -> https://github.com/kemayo/actions-recent-changelog

dnil commented 3 weeks ago

😂 Well, it seems to sort of work, but it doesn't flag the fail?!

Screenshot 2024-06-05 at 15 18 37
dnil commented 3 weeks ago

Could this action be used? -> https://github.com/kemayo/actions-recent-changelog

Mm, possibly, or perhaps changelog-reader-actionchangelog-reader-action plus a little script. The slightly tricky part to differentiate the ordinary PRs from release branch PRs. The latter changelog-enforcer does, but it still doesn't allow checking only the topmost part as far as I can tell.

northwestwitch commented 3 weeks ago

but it still doesn't allow checking only the topmost part as far as I can tell.

No, I don't think so either. You should write our own action then! :)

sonarcloud[bot] commented 3 weeks ago

Quality Gate Passed Quality Gate passed

Issues
0 New issues
0 Accepted issues

Measures
0 Security Hotspots
No data about Coverage
No data about Duplication

See analysis details on SonarCloud

dnil commented 2 weeks ago

Yes, making a new action may me less painful than forcing this on a weird combination of existing ones...