Is your feature request related to a problem in the current program to new available techology or software? Please describe and add links/citations if appropriate.
Given that we can update vcf files for a case, it seems reasonable to be able to update also the omics files.
Describe the solution you'd like
Add case level omics file options to scout update case.
Describe alternatives you've considered
The command is a bit clunky as it is. It is tempting to refactor to have something more command like, like
scout update case vcf sv research instead of the current multiple options. But that will have to wait for a major I guess.
Additional context
Perhaps also consider adding an update for the rna_genome_build here, since the change would be in the same function anyway.
Is your feature request related to a problem in the current program to new available techology or software? Please describe and add links/citations if appropriate. Given that we can update vcf files for a case, it seems reasonable to be able to update also the omics files.
Describe the solution you'd like Add case level omics file options to
scout update case.Describe alternatives you've considered The command is a bit clunky as it is. It is tempting to refactor to have something more command like, like
scout update case vcf sv researchinstead of the current multiple options. But that will have to wait for a major I guess.Additional context Perhaps also consider adding an update for the
rna_genome_buildhere, since the change would be in the same function anyway.