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Clinical-Genomics / trailblazer

Keep track of and manage analyses
MIT License
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Scan fails for some upload jobs #396

Closed seallard closed 7 months ago

seallard commented 7 months ago 
2024-02-19 14:40:58 hasta.scilifelab.se trailblazer.services.job_service[108610] INFO Updating upload job 672236017
Traceback (most recent call last):
 File "/home/proj/production/bin/miniconda3/envs/P_trailblazer/bin/trailblazer", line 8, in <module>
   sys.exit(base())
            ^^^^^^
 File "/home/proj/production/bin/miniconda3/envs/P_trailblazer/lib/python3.11/site-packages/click/core.py", line 1157, in __call__
   return self.main(*args, **kwargs)
          ^^^^^^^^^^^^^^^^^^^^^^^^^^
 File "/home/proj/production/bin/miniconda3/envs/P_trailblazer/lib/python3.11/site-packages/click/core.py", line 1078, in main
   rv = self.invoke(ctx)
        ^^^^^^^^^^^^^^^^
 File "/home/proj/production/bin/miniconda3/envs/P_trailblazer/lib/python3.11/site-packages/click/core.py", line 1688, in invoke
   return _process_result(sub_ctx.command.invoke(sub_ctx))
                          ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
 File "/home/proj/production/bin/miniconda3/envs/P_trailblazer/lib/python3.11/site-packages/click/core.py", line 1434, in invoke
   return ctx.invoke(self.callback, **ctx.params)
          ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
 File "/home/proj/production/bin/miniconda3/envs/P_trailblazer/lib/python3.11/site-packages/click/core.py", line 783, in invoke
   return __callback(*args, **kwargs)
          ^^^^^^^^^^^^^^^^^^^^^^^^^^^
 File "src/dependency_injector/_cwiring.pyx", line 28, in dependency_injector._cwiring._get_sync_patched._patched
 File "/home/proj/production/bin/miniconda3/envs/P_trailblazer/lib/python3.11/site-packages/trailblazer/cli/core.py", line 105, in scan
   job_service.update_upload_jobs()
 File "/home/proj/production/bin/miniconda3/envs/P_trailblazer/lib/python3.11/site-packages/trailblazer/services/job_service.py", line 33, in update_upload_jobs
   updated_job: SlurmJobInfo = self.slurm_service.get_job_info(job.slurm_id)
                               ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
 File "/home/proj/production/bin/miniconda3/envs/P_trailblazer/lib/python3.11/site-packages/trailblazer/services/slurm/slurm_cli_service/slurm_cli_service.py", line 15, in get_job_info
   return create_job_info_dto(job)
          ^^^^^^^^^^^^^^^^^^^^^^^^
 File "/home/proj/production/bin/miniconda3/envs/P_trailblazer/lib/python3.11/site-packages/trailblazer/clients/slurm_cli_client/utils.py", line 6, in create_job_info_dto
   return SlurmJobInfo(
          ^^^^^^^^^^^^^
 File "/home/proj/production/bin/miniconda3/envs/P_trailblazer/lib/python3.11/site-packages/pydantic/main.py", line 164, in __init__
   __pydantic_self__.__pydantic_validator__.validate_python(data, self_instance=__pydantic_self__)
pydantic_core._pydantic_core.ValidationError: 1 validation error for SlurmJobInfo
started_at
 Input should be a valid datetime [type=datetime_type, input_value=None, input_type=NoneType]
   For further information visit https://errors.pydantic.dev/2.5/v/datetime_type