Generate comparisons, excel generation, optional flag for read extraction

ClinicalGenomicsGBG / Taxprofiler-Metagenomics

Taxprofiler and Parser on medstore

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Closed SannaAb closed 6 months ago

SannaAb commented 6 months ago

Comparisons for metagenomics samples
Excel generation
Option to turn of read extraction for diamond, kraken2 and krakenuniq. The read extraction is slow specially for diamond. Might not be nececcary to include them in research projects.

Closes #2