As it is now krakenuniq extracts reads based on species, subspecies and strains.
But there are also examples like Pseudomonas syringae that has a species group. We need to extract these reads as well otherwise they are lost.
Idea is to use the increment, when reaching species collect all increments untill we are not incrementing anymore.
KrakenUniq Parser
As it is now krakenuniq extracts reads based on species, subspecies and strains. But there are also examples like Pseudomonas syringae that has a species group. We need to extract these reads as well otherwise they are lost.
Idea is to use the increment, when reaching species collect all increments untill we are not incrementing anymore.