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ClinicalGenomicsGBG / Taxprofiler-Metagenomics

Taxprofiler and Parser on medstore
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Diamond output difference #5

Open SannaAb opened 4 months ago

SannaAb commented 4 months ago

Comparing a test run from 201223 and 200224 there is a slight difference in the output. The first one detect 91 reads towards Leptospira yasudae. The second run detects 90. There is no difference in the diamond versions although the taxprofiler runs are 1.1.2 and 1.1.3. The difference is within diamond itself, not the parser.

SannaAb commented 4 months ago

The difference in the read is that the same read mapping to Leptospira yasudae now maps to bacteria only instead (ME7J7:01241:12731) from sample 021_KV23-13129-DNA-abscess-231219_666-1463_231220.