Open 3mmaRand opened 1 year ago
also give the results for pilon/pilon.fasta and assembly/assembly.fasta
csuser@metagenomicsT3instance04:~/cs_course/analysis $ seqkit stats -a pilon/pilon.fasta
file format type num_seqs sum_len min_len avg_len max_len Q1 Q2 Q3 sum_gap N50 Q20(%) Q30(%) GC(%)
pilon/pilon.fasta FASTA DNA 154 15,070,837 3,144 97,862.6 6,074,532 7,175 13,279.5 34,010 0 2,992,063 0 0 52.27
csuser@metagenomicsT3instance04:~/cs_course/analysis $ seqkit stats -a assembly/assembly.fasta
file format type num_seqs sum_len min_len avg_len max_len Q1 Q2 Q3 sum_gap N50 Q20(%) Q30(%) GC(%)
assembly/assembly.fasta FASTA DNA 154 15,044,596 3,164 97,692.2 6,068,626 7,305 13,291 34,108 0 2,976,493 0 0 52.38
csuser@metagenomicsT3instance04:~/cs_course/analysis $
correct commands given in solution so paths correct