search

Cloufield / gwaslab

A Python package for handling and visualizing GWAS summary statistics. https://cloufield.github.io/gwaslab/
GNU General Public License v3.0
151 stars 25 forks source link

Liftover returning only column headings #100

Closed halkelchen closed 3 months ago

halkelchen commented 3 months ago

Hi, I am having an issue with the lift-over function, it is just returning the column headings without any data. Any ideas what I am doing wrong or how to fix this?

Screenshot 2024-06-13 at 10 27 31 PM
Cloufield commented 3 months ago

Hi, it seems that mysumstats was already empty before liftover based on the log. I am wondering which function you used before liftover?

halkelchen commented 3 months ago

I had put it right after importing it. I moved it in my code to be after the basic check and it worked fine then, I think it must have been an error with the chromosome column before fixing it with the check. I got it to work now!