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Cloufield / gwaslab

A Python package for handling and visualizing GWAS summary statistics. https://cloufield.github.io/gwaslab/
GNU General Public License v3.0
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Regional Plot missing gene data #29

Closed XaviFar closed 1 year ago

XaviFar commented 1 year ago

I updated to the latest version 3.4.15 and suddenly the regional plots are not showing the genes.

mysumstats.plot_mqq(mode="r", region=(10,86931726,88931726),region_grid=True, save='regional.png')

This used to return a plot with the genes below, and now the gene information doesn't appear

Cloufield commented 1 year ago

Hi， The genome version needs to be explicitly specified from 3.4.15 (because some users may forget to set this and use the wrong build). You can simply add build="19" or build="38" in plot_mqq().

XaviFar commented 1 year ago

Thank you! I wasn't aware of this change! It works as intended again! :) Maybe you could add some kind of warning if the build is not specified or use one by default and show it in the log. Again very useful tool!